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Home / Undergraduate Research Highlights / Chemistry
 
Chemistry Highlights
Total Listing: 293    (Listed by the order of record adding time, Descending)
( 1 )   Recorded at: 2/13/2008      
Title Escherichia coli RNA polymerase-associated SWI/SNF protein RapA: evidence for RNA-directed binding and remodeling activity
Journal Nucleic Acids Res, 2007;35:1-17, McKinley BA, Sukhodolets MV
Description Helicase-like SWI/SNF proteins are present in organisms belonging to distant kingdoms from bacteria to humans, indicating that they perform a very basic and ubiquitous form of nucleic acid management; current studies associate the activity of SWI/SNF proteins with remodeling of DNA and DNA–protein complexes. This work presents evidence that RapA - the bacterial homolog of eukaryotic SWI/SNF proteins - binds and remodels RNA during transcription
Faculty Maxim V. Sukhodolets is an assistant professor of biochemistry
Student Brian McKinley is still enrolled at LU. He contributed to this work during the 2006/07.
Fund This study was supported in part by Grant Number R15GM081803 from the National Institute of General Medical Sciences (to MVS), a Welch Foundation grant (V-0004), and departmental fund
 
( 2 )   Recorded at: 2/13/2008      
Title The externally derived portion of the hyperosmotic shock-activated cytosolic calcium pulse mediates adaptation to ionic stress in suspension-cultured tobacco cells
Journal J Plant Physiol, 2007;164: 815-823, Cessna SG, Matsumoto TK, Lamb GN, Rice SJ, Hochstedler WW
Description The influx of calcium into the cytosol has long been suggested to serve as a signaling intermediate in the acquisition of tolerance to hyperosmotic and salinity stresses in plant cells, but the cellular origins (e.g. organelle release or externally-derived influx) of the calcium entering the cytosol have been disputed. Using tobacco cells that were stably transformed to express the cytosol-localized Ca2+-sensitive bioluminescent protein aequorin, we demonstrate that hyperosmotic stress initiates a cytosolic calcium signal deriving from both the release of organellar calcium and the entry of extracellular calcium. Using selective calcium signaling inhibitors, the externally-derived portion of this calcium signal was subsequently shown to be critical in ionic stress acquisition in these cells
Faculty Steve Cessna is an associate professor of biochemistry. Tracie Matsumoto is a research horticulturalist at the Pacific Basin Tropical Plant Genetic Resource, ARS-USDA, Hilo, HI
Student Wendy Wenger-Hochstedler helped initiate the project as part of an independent study course during her senior year (2001). Wendy has since finished a master’s program in biology and now does occasional contract work for the US National Parks Service while taking care of her new baby. Shawn Rice and Greg Lamb added to the project over two different summers (2002 and 2004), and then both continued into the following fall semesters. Shawn is in a biology graduate program and Greg is pursuing a medical degree
Fund The research was funded by a grant form the Thomas F. Jeffress and Kate Miller Jeffress Memorial Trust.
 
( 3 )   Recorded at: 2/13/2008      
Title Substituent effects on the relative electronic energies of pyrrole and the imine tautomers of pyrrole
Journal J Undergrad Chem Res, 2007;6:119-128, Wilson WR, Ligare MR, Codding SJ, Berumen JM, Zoellner RW
Description Hartree-Fock computational methods were used to determine the structures and properties of twenty-three tetra-substituted pyrroles in order to determine the effect of ring substituents on the relative energies of the pyrrole tautomers and the cyclic imine (azadiene) tautomers. When tetra-substituted with either fluoro-, hydroxy-, methoxy-, amino-, dimethylamino-, nitro-, or vinyl-substituents, the azadiene tautomer is predicted to be more stable than the pyrrole tautomer
Faculty Robert W. Zoellner is a professor of chemistry; the project was part of an independent study course
Student Wilton R. Wilson and Sara J. Codding participated in the project as seniors and are currently employed in industry, and Marshall R. Ligare and Jason M. Berumen participated in the project as juniors and are currently enrolled as seniors
Fund The project was supported in part by an NSF-CCLI grant
 
( 4 )   Recorded at: 2/13/2008      
Title Characteristics of aggregation induced emission in 1,1-dimethyl-2,3,4,5-tetraphenyl and 1,1,2,3,4,5-hexaphenyl siloles and germoles
Journal J Inorg Organomet P, 2007;17:201-213, Mullin JL, Tracy HJ, Ford JR, Keenan SR, Fridman F
Description A comparative study of the dramatic aggregation-induced enhancement (AIE) of luminescence exhibited by a set of four metalloles (two siloles and two germoles) was undertaken in an effort to characterize this unusual behavior and gain insights into it origins. All four of the compounds studied showed increases in luminescence quantum yields of approximately two orders of magnitude in aggregated states, compared to unaggregated states in solution. The characteristics of this behavior point to restricted intramolecular rotations within the propeller-shaped molecules as the primary cause of the dramatic increase in luminescence of the aggregates. This was an invited paper in a special issue of JIOPM in honor of Professor Ian Manners
Faculty Jerome Mullin is professor of chemistry at the University of New England (UNE). Henry Tracy is professor of chemistry, and James Ford is assistant professor of chemistry at the University of Southern Maine (USM)
Student Scott Keenan participated in the research during the summer between his junior and senior years; Fred Fridman carried out his work on the project during his junior and senior years, as well as the summer between those years. Scott Keenan currently is employed as a chemist in industry in the Greater Portland area; Fred Fridman currently is applying to medical school.
Fund The work was supported by mini-grants provided by UNE and USM
 
( 5 )   Recorded at: 2/13/2008      
Title Reverse selectivity in m-CPBA oxidation of oligothiophenes to sulfones
Journal Org Lett, 2001;9:3721-3724, Pappenfus TM, Melby JH, Hansen BB, Sumption DM, Hubers SA, et al
Description Oligothiophene sulfones of up to six rings can be conveniently prepared by the direct oxidation of butyl-substituted thiophene oligomers with m-CPBA in dichloromethane. Reverse selectivity of oxidized rings is observed relative to previously reported systems without alkyl-substitution. Thiophene-based sulfones (or S,S-dioxides) are an important class of organic materials for a variety of applications including opto-electronic devices and biodiagnostics. This research was a collaborative effort between several institutions
Faculty Ted Pappenfus is an assistant professor of chemistry
Student Jacob Melby, Brent Hansen and Devin Sumption began the project during the Introduction to Research course required of UMM’s chemistry majors. Jacob continued the project in the summer after his sophomore year. During his junior year, Scott Hubers analyzed the absorption/emission properties of the materials as an independent research study. Jacob is currently a graduate student in materials science at Carnegie Mellon University and Brent in employed in industry. Scott and Devin are currently still enrolled
Fund The research was supported by the Morris Academic Partnership Program funded by Dean's Office and by the National Science Foundation.
 
( 6 )   Recorded at: 2/13/2008      
Title Dynamics of water in carbon tetrachloride
Journal J Phys Chem A, 2007;111:6146-6150, Goodnough JA, Goodrich L, Farrar TC
Description A dilute solution of water in a hydrophobic solvent, such as carbon tetrachloride (CCl4), presents an opportunity to study the rotational properties of water without the complicating effects of hydrogen bonds. We reported the results of theoretical, experimental, and semiempirical studies of a 0.03 mole percent solution of water in CCl4. It was shown that for this solution there are negligible water-water interactions or water-CCl4 interactions; theoretical and experimental values for proton NMR chemical shifts are used to confirm the minimal interactions between water and the CCl4. The average correlation time (time for the vector to rotate one radian) for the position vector of 17O in monomer water is 91 fs. The average value for the deuterium correlation time for the deuterium vector (along the OD bond) is 104 fs. Jennifer Goodnough is a professor of chemistry
Faculty Thomas Farrar is a professor emeritius of chemistry at the University of Wisconsin, Madison
Student Lauren Goodrich participated in this research during her junior year at the Univeristy of Minnesota, Morris. She graduated in May 2007 and is pursuing her PhD in chemistry at the University of Michigan
Fund The research was supported with funding from the MAP (Morris Academic Partnership) Program
 
( 7 )   Recorded at: 2/13/2008      
Title . cis-2,2-Dimethyl-1,3-diphenyl-2,3-dihydro-1H-benzo[c]silole
Journal Acta Crystallogr, 2007;E63:o3346, Watson AJ, Cope SK, Jones DS, Ogle CA
Description The title compound was prepared in a model reaction for the preparation of new phosphine ligands of similar structure via dicarbanions. Crystallographic work on the compound reveals the structure of the title compound, C22H22Si, which includes a benzosilacyclopentene in which the silacyclopentene ring assumes an envelope conformation. The Si atom is bonded to two methyl groups and to two carbons in the ring, which are each bonded to phenyl rings in the cis confirmation
Faculty Daniel Jones and Craig Ogle are professors of chemistry
Student Amanda Watson and Stephen Cope are undergraduate students who have participated in research. Cope synthesized the title compound as part of his undergraduate research. Watson began crystallographic work on the title compound during her freshman year as part of her undergraduate research, and then continued work as part of her senior thesis. Both are currently enrolled
Fund The research was supported through funds provided by the University of North Carolina at Charlotte
 
( 8 )   Recorded at: 2/13/2008      
Title Lead analysis in soils and sediments at the Saginaw Field and Stream Club
Journal Spectrosc Lett, 2007;40:525-536, Strait MM, Naile JE, Hix JML
Description Soil and sediment samples from the Saginaw Field and Stream Club in Saginaw County, MI were collected to determine whether lead levels at the club shooting ranges pose a threat to the environment. This is part of an on-going project to evaluate and make recommendations to the Club in their cleanup efforts. In general, lead was pervasive at the site in both metallic and soluble forms and occurs at concentrations significantly in excess of the Michigan Department of Environmental Quality criteria
Faculty Melissa Strait is a professor of chemistry
Student Jon Naile and Jeremy Hix participated in this project as independent study students starting during their sophomore year and continuing through their senior year. Naile is currently in graduate school and Hix is employed in industry
Fund This research was supported through a grant from the Saginaw Field and Stream Club and by Alma College
 
( 9 )   Recorded at: 2/13/2008      
Title Synthesis, larvicidal, QSAR and structural studies of some triorganotin 2,2,3,3-tetramethylcyclopropane-carboxylates
Journal Appl Organomet Chem, 2007;21:545-550, Song X, Zapata A, Hoerner J, de Dios AC, Casabianca L, Eng G
Description A series of triorganotin 2,2,3,3-tetramethylcyclopropanecarboxylates, where R = methyl, ethyl, n-propyl, n-butyl, phenyl and cyclo-hexyl, were synthesized. Structural characterization by several spectroscopic techniques indicated that all the complexes with the exception of the four-coordinated tricyclohexyl compound were five-coordinated in the solid state. In solution, all the complexes were four-coordinated. Larvicidal activities of the complexes were effective against three species of mosquito larvae. Lastly, quantitative structure-activity relationships (QSARs) were developed for each species of larvae
Faculty Both George Eng and Xueqing Song are professors of chemistry. Angel C. de Dios is a professor of chemistry at Georgetown University
Student Jana Hoerner participated in this research project during her sophomore year. She is currently in her third year and is working on additional projects
Fund The research was funded by the NIH/SCORE program
 
( 10 )   Recorded at: 2/13/2008      
Title A search accelerated correct intensity Fourier transform microwave spectrometer with pulsed laser ablation source
Journal Rev Sci Instrum,, 2007;78:096106-3, Grubbs GS II, Dewberry CT, Etchison KC, Kerr KE, Cooke SA
Description This article describes the successful development and implementation of a laser ablation source-equipped Fourier transform microwave spectrometer capable of observing 4 GHz regions of spectra in a single data acquisition event. The dramatically increased speed with which regions may be searched, when compared to other high resolution microwave techniques, allows the source conditions to be the prime variable in laser ablation microwave spectroscopic studies. A second feature of the technique is that observed spectral features have correct relative intensities
Faculty Stephen Cooke is an assistant professor of chemistry
Student Kate Kerr participated in this long running project beginning in her junior year and ending in her senior year. Kate has just entered graduate school at UNT
Fund Major support for the research was obtained from an ACS/PRF Type G award and UNT
 
( 11 )   Recorded at: 2/13/2008      
Title Palladium-catalyzed homocoupling of arenediazonium salts: an operationally simple synthesis of symmetrical biaryls
Journal Tetrahedron Lett., 2007;48:7687-7690, Robinson MK, Kochurina VS, Hanna JM Jr
Description A simple procedure for the intermolecular homocoupling of arenediazonium salts in air using a catalytic amount of palladium acetate was developed. The optimum conditions were found to be 15 mol% palladium acetate in refluxing methanol, with no additional terminal reducing agent required. These optimized conditions were used to prepare biaryls from several arenediazonium tetrafluoroborate salts, and most examples proceeded in moderate to high yields
Faculty James M. Hanna, Jr. is an assistant professor of chemistry
Student Monique Robinson participated in this work during the spring semester of her freshman year and continued it the following summer. Vasilina (Lisa) Kochurina participated in this project during the summer after her sophomore year. Both are currently still enrolled as undergraduates; Monique is a sophomore chemistry major, and Lisa is a junior biology major
Fund This research was supported through grants received from the Winthrop University Research Council
 
( 12 )   Recorded at: 2/12/2008      
Title Substrate specificity of Fpg (MutM) and hOGG1, two repair glycosylases
Journal J Amer Chem Soc, 2007;129:7724 – 7725, Hamm ML, Gill TJ, Nicolson SC, Summers MR
Description The E.coli and human enzymes Fpg and hOGG, respectively, repair the prominent and promutagenic DNA lesion 8-oxo-2’-deoxyguanosine (OdG). OdG differs from dG (an inactive substrate) at only two positions, N7 and C8; thus the importance of either of these sites to substrate recognition by these enzymes has long been questioned. In this study, three analogues of OdG that varied at N7 and/or C8 were found to be active with either enzyme indicating that substrate recognition is based more on the absence of a clashing co-planer lone pair at N7 (present in dG) and less on the presence of a specific enzyme interaction with OdG
Faculty Michelle Hamm is an associate professor of chemistry
Student Tim Gill worked on this project from his sophomore year through graduation, including two summers; after finishing a year in AmeriCorps, he is currently applying to medical school. Sarah Nicolson worked on the project during her sophomore and junior years, including one summer; she is currently in her senior year at Richmond and is applying to graduate school in Biochemistry. Matt Summers worked on this project for one term during his senior year and is currently in medical school at the Mayo Clinic in Rochester, MN on a Dean’s Scholarship
Fund This research was supported with an NSF-CAREER grant and by ACS-PRF
 
( 13 )   Recorded at: 2/12/2008      
Title Determining the enthalpy, free energy, and entropy for the solubility of salicylic acid with the Van’t Hoff Equation: A spectrophotometric determination of Keq
Journal Chem Educ, 2007;12(1):18-21, Barreto JC, Dubetz TA, Brown DW, Barreto PD, Coates CM, Cobb A
Description A laboratory exercise was developed for the General Chemistry II curriculum which involved the determination of the common thermodynamic parameters of solvation. The experiment is based upon determining the solubility of salicylic acid at many different temperatures with the sharing of the data points by the class; our design allows for the calculation of enthalpy, entropy and free energy for the process of dissolution, without using a calorimeter
Faculty Jose Barreto is a professor of chemistry; Dubetz and Brown are associate professors and Patricia Barreto is a research associate
Student Cristina Coates is a post-doctoral fellow, all in the Department of Chemistry and Mathematics. During summer 2006, Allison Cobb participated in this research as a visiting summer student at FGCU (she was a junior at William Jewell College in Kansas at the time). She also worked on a green technology research project involving photocatalysis. Allison is interested in pursuing a career in environmental science and is a senior in Chemistry at William Jewell
Fund The instruments used in this investigation were purchased with DOJ grant #2004-LC-CX-K048
 
( 14 )   Recorded at: 2/12/2008      
Title Fiber optic spectroelectrochemical sensing for in situ determination of metal ions
Journal Spectrosc Lett, 2007;40:501-511, Flowers PA, Arnett KA
Description In situ chemical sensing techniques are increasingly used for a variety of applications, including industrial process control, on-site environmental assessment, and detection of explosives and chemical and biological weapons. This article reports a summary of progress made by the authors' group toward the development of fiber optic-based sensors that employ simultaneous spectral and electrochemical measurements. Aqueous copper(II) was used as a model system to investigate the merit of an analytical scheme involving sequential electrodeposition, anodic stripping, and spectral detection of analyte
Faculty Paul Flowers is a chemistry professor
Student Kristen Arnett worked on this project over several semesters and two summers, beginning during her sophomore year. She is presently a senior majoring in chemistry with plans to pursue graduate studies
Fund This project was supported by a grant from the NSF-REU program
 
( 15 )   Recorded at: 2/12/2008      
Title Effective refractive index and intermolecular forces associated with a phase of functional groups
Journal Surf Sci, 2007;601:4582-4585, Yadav PS, Dupre D, Tadmor R, Park JS, Katoshevski D
Description Cases in which functional groups form distinct phases are common in material science in general and specifically in polymer and surfactant sciences. To calculate the van der Waals forces associated with such phases, the refractive index of the phases must be evaluated. We have a method to estimate the refractive index of ‘functional group phases’ and discuss how to use these estimations to calculate the associated interaction energies and thereby modify the total calculated van der Waals forces
Faculty Rafael Tadmor is a professor in the Chemical Engineering department. David Katoshevski is a professor in the Department of Biotechnology and Environmental Engineering, Ben Gurion University, Israel
Student Preeti Yadav was a Ph.D. student in the Chemical Engineering department at Lamar University. Derek Dupre is an undergraduate student in the Chemical Engineering department at Lamar University and participated in this project as part of an Honors course. He is currently in his last year of studies as an undergraduate. Jennifer Park participated in this study a summer after her sophomore year. She is currently a PhD student at the University of California San Diego
Fund The research was supported through an NSF-DMR grant, an ACS-PRF grant, and a Lamar University Research Enhancement grant
 
( 16 )   Recorded at: 2/12/2008      
Title Main group metal halide complexes with sterically hindered thioureas part XVIII: The synthesis, characterization, and X-ray crystallographic study o